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RNA-Pol-III tutorial: update for the new DisVis and PowerFit services - #810
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Move the updated tutorial to education/HADDOCK24/RNA-Pol-III and adapt it to the csbportal DisVis and PowerFit services (report.html with Mol*), ChimeraX 1.10 and the current HADDOCK2.4 server: new example runs, powerfit-score rescoring, clash analysis and fitting of the refined models. Point education/index.md to the updated tutorial and set the PowerFit web server tutorial to v6.1.0. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Remove the references to strategy 1, rename the docking pictures, set the docking sampling to 2000/200/200, link the new pre-calculated docking run and add an answer on the cluster statistics. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Link docking run 798370 and update the answers from it: cluster statistics, cross-link distances, EM fit and runtime. Fix the ChimeraX fitting commands (model numbers instead of #model/#density, local fit instead of a random search) and remove repeated distance commands. Update the two docking pictures. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Clear the shown distances at the start of each block so the blocks can be pasted in one ChimeraX session, and measure all C34 wHTH2 cross-links in its own block again. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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What changed
education/HADDOCK24/RNA-Pol-III/now holds the updated tutorial (previously the 2024 version). It is adapted to the new DisVis and PowerFit services (report.html with Mol*), ChimeraX 1.10 and the HADDOCK2.4 server:RNA-Pol-III-2026.zipon SURFdrive; the old zip and unused pictures are removed.education/index.mdlinks to the updated tutorial.The RNA-Pol-III-2022 and RNA-Pol-III-2024 directories are left as they are; removing them is planned for a separate PR.
How it was checked
JEKYLL_ENV=production bundle exec jekyll build).clusters.cxs.Not tested: the server submission forms step by step (labels checked against the csbportal source), and the live rendering on GitHub Pages.
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