Issues

• Replace mp.Pool with ThreadPoolExecutor in apply_inverse_transfer_function_single_position

  Biohub/waveorder#552 · Filter by author aofei-liu opened on Apr 21, 2026
  1

• One-sided 2D phase reconstructions

  Biohub/waveorder#549 · Filter by author talonchandler opened on Apr 10, 2026

• Can we compute midband spatial frequency faster by multiplying on a GPU?

  GPU
  Biohub/waveorder#533 · Filter by author talonchandler opened on Mar 9, 2026
  1

• [DOC] Docs page is not showing releases

  documentation
  Biohub/waveorder#521 · Filter by author talonchandler opened on Feb 10, 2026
  1

  

• [DOC] Render comment blocks in example scripts

  documentation
  Biohub/waveorder#497 · Filter by author ziw-liu opened on Sep 25, 2025
  1

• Hide/remove "Acquisition / Reconstruction" tab & update related documentation

  documentation
  Biohub/waveorder#483 · Filter by author talonchandler opened on Sep 8, 2025
  

• Add feature comparison table to README

  documentation
  Biohub/waveorder#474 · Filter by author talonchandler opened on Sep 4, 2025
  

• [DOCS] /waveorder/stokes docstring doesn't render cleanly

  documentation
  Biohub/waveorder#466 · Filter by author talonchandler opened on Aug 17, 2025

• [DOCS] Citation section

  documentationenhancement
  Biohub/waveorder#465 · Filter by author amitabhverma opened on Aug 15, 2025

• [DOCS] Explore hosting of video files

  documentation
  Biohub/waveorder#464 · Filter by author amitabhverma opened on Aug 15, 2025

• [DOCS] Parent Section highlighting

  bugdocumentation
  Biohub/waveorder#463 · Filter by author amitabhverma opened on Aug 15, 2025

• [DOCS] Clearer organization of examples and guides

  documentation
  Biohub/waveorder#444 · Filter by author mattersoflight opened on Apr 1, 2025
  2

  

• Plugin menu name should be simpler

  enhancement
  Biohub/waveorder#199 · Filter by author talonchandler opened on Jan 3, 2025

• More accurate RAM calibration

  enhancement
  Biohub/waveorder#190 · Filter by author ziw-liu opened on Dec 10, 2024
  1

  

• Dynamically scale CPU count per volume in submitit

  enhancement
  Biohub/waveorder#200 · Filter by author ziw-liu opened on Nov 26, 2024
  2

  

• [BUG] Max number of CPUs per task is limited by the submission node

  bug
  Biohub/waveorder#202 · Filter by author ziw-liu opened on Sep 24, 2024
  1

  

• [BUG] Connection via pycromanager failing

  Biohub/waveorder#203 · Filter by author dbcortes2042000 opened on Sep 11, 2024
  10

  

• Non-negative fluorescence output?

  Biohub/waveorder#163 · Filter by author ziw-liu opened on Mar 27, 2024
  2

  

• 3D phase reconstruction should not use reflection padding

  bug
  Biohub/waveorder#161 · Filter by author talonchandler opened on Mar 15, 2024
  4

  

• [BUG] Background acquisition fails when MM's pixel size is not calibrated

  Biohub/waveorder#211 · Filter by author talonchandler opened on Dec 3, 2023
  

• GUI warnings do not persist

  Biohub/waveorder#216 · Filter by author ziw-liu opened on Oct 6, 2023
  

• Remove waveorder_reconstructor and waveorder_simulator files

  Biohub/waveorder#143 · Filter by author talonchandler opened on Jul 26, 2023
  1

  

• Warnings related to colorspacious

  Biohub/waveorder#234 · Filter by author talonchandler opened on Jul 25, 2023
  

• Divide by zero during phase normalization

  Biohub/waveorder#140 · Filter by author talonchandler opened on Jul 25, 2023
  

• [FEATURE] display or filter the phase image such that background is black

  Biohub/waveorder#238 · Filter by author mattersoflight opened on May 8, 2023